E-loop Motifs in 23S rRNA Identified by Automated Methods

E-loop Motif # residue #s sequence coordinates
170 170-178
158-165
5' UCUCAGUAU 3'
3' AGUCA_AGA 5'
[]
208 208-216
224-231
5' CGUUAGUAA 3'
3' GCGCA_AGU 5'
[]
353 353-361
291-298
5' GACCAGUAC 3'
3' CUGCC_AGC 5'
[]
583 583-591
567-574
5' GUCCAGUAA 3'
3' CAGCC_AGU 5'
[]
1365 1365-1373
2052-2058
5' CCAUAGUAG 3'
3' GUCA_AGU 5'
[]
2687 2687-2695
2700-2705
5' GUAUAGUAC 3'
3' CAUCA_AGG 5'
[]