Name

3-letter code

1-letter code

Neumonic

pka

Relative abundance (%)

Volume (^3)




Chemical Structure

Click on the images below to view the 3D structures, (i.e., for link to coordinates).




Glycine

Gly

G

Glycine

-

7.5

48




flexible, seen in turns





Alanine

Ala

A

Alanine

-

9.0

67




hydrophobic, unreactive





Valine

Val

V

Valine

-

6.9

105




hydrophobic, unreactive, stiff, B-substitution





Leucine

Leu

L

Leucine

-

7.5

124




hydrophobic, unreactive





Isoleucine

Ile

I

Isoleucine

-

4.6

124




hydrophobic, unreactive, stiff, B-substitution





Methionene

Met

M

Methionine

-

1.7

124




thio-ether, only unbranched nonpolar, metal binding site





Cysteine

Cys

C

Cysteine

8.33

2.8

86




thiol, disulfide cross-links, binds to iron and zinc, nucleophile in proteases





Proline

Pro

P

Proline

-

4.6

90




2° amine, stiff, 20% cis, seen in turns





Phenylalanine

Phe

F

Fenylalanine

-

3.5

135




hydrophobic, unreactive, polarizable, UVmax=280nm





Tryptophan

Trp

W

tWo rings

-

1.1

163




largest amino acid, hydrophobic, fluorescent, UVmax = 250nm, charge transfer





Serine

Ser

S

Serine

-

7.1

73




hydroxyl, nucleophile in serine proteases





Threonine

Thr

T

Threonine

-

6.0

93




hydroxyl, stiff, B-substitution





Tyrosine

Tyr

Y

Tyrosine

10.13

3.5

141




aromatic, hydroxyl





Asparagine

Asn

N

AsparagiNe

-

4.4

91








Glutamine

Gln

Q

Qutamine

-

3.9

114








Lysine

Lys

K

Before L

10.79

7.0

135




amine base, floppy





Arginine

Arg

R

Arginine

12.48

4.7

148




guanido base, good charge couple with acid





Histidine

His

H

Histidine

6.04

2.1

118




imidazole acid or base; pKa = pH(physio), member of catalytic triad in serine proteases, binds to copper and zinc





Aspartic Acid

Asp

D

AsparDic

3.90

5.5

91




carboxylic acid, in active sites for cleavage of C-O bonds, member of catalytic triad in serine proteases, binds to calcium





Glutamic Acid

Glu

E

GluEtamic

4.07

6.2

109




carboxylic acid, binds to calcium





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