Macro Mol Structure
williams page ->
RNA MOTIFS
in
HM 23s rRNA
[ALL]
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Kink-Switch /
Tetraloops /
E-loop Motifs /
Aurora Joints /
Interaction Key /
S. Nuc. Pol. /
bootstrapping /
Torsion Angles /
Bins /
Mesoscopic Space /
Mesoscopic Output /
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]
TETRALOOPS (HM 23s)
residue numbers/sequences/coordinates
family tree
tetraloop triplet
Schematics
standard
insertion
deletion
132 superimpose
torsional fingerprint
locations in s-structure
Clickable Map: Click to Zoom and Navigate
images of loop #3 (initial residue 468)
all atoms
backbone only
references
coordinates
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Kink-Switch /
Tetraloops /
E-loop Motifs /
Aurora Joints /
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]
Kink-Switch
Text Summary
Cock/Trip (Global)
Cock/Trip (Hypertwist)
Axial View (Hypertwist)
residue numbers/sequences/coordinates
locations in 23S s-structure
Cocked Superimpositions
Tripped Superimpositions
schematic diagrams
[
22c |
815c |
2501c ||
8tf |
6tr |
7t |
2t |
5t |
1t-par |
3t-par |
4t |
]
c=cocked,t=tripped,p=parallel,r=rigid,f=flippable
Clickable Map: Click to Zoom and Navigate
images of k-turn #2
all atoms
backbone only
color by strand
W-C base pairs
A-G base pairs
bulged G
references
[
Kink-Switch /
Tetraloops /
E-loop Motifs /
Aurora Joints /
Interaction Key /
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]
Hypertwist Motifs
residue numbers/sequences/coordinates
superimpositions
locations in s-structure
[
22 |
365 |
439 |
793 |
815 |
1587 |
2501
]
Clickable Map: Click to Zoom and Navigate
image
image superimposition
[
Kink-Switch /
Tetraloops /
E-loop Motifs /
Aurora Joints /
Interaction Key /
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]
E-LOOP MOTIFS
residue numbers/sequences/coordinates
superimpositions
locations in s-structure
Clickable Map: Click to Zoom and Navigate
images
all atoms
backbone
color by strands
A-G base pair
U-A Hoogsteen
W-C base pairs
C-C base pair
bulged G
all bases
references
coordinates
[
Tetraloops /
Kink-Switch /
E-loop Motifs /
Hypertwist Motifs /
Aurora Joints /
Interaction Key /
top
]
Aurora Joints
residue numbers/sequences/coordinates
superimpositions
locations in s-structure
Clickable Map: Click to Zoom and Navigate
[
Tetraloops /
Kink-Switch /
E-loop Motifs /
Hypertwist Motifs /
Aurora Joints /
Interaction Key /
top
]
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Macro Mol Structure
williams page ->
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